First Fluorescent Protein Identified in Vertebrates

Sophia David

A novel fluorescent protein discovered in Japanese eels may offer superior experimental advantages and clinical applications

In the early 1960s, researchers investigating the bioluminescent properties of the Aequorea victoria jellyfish discovered a protein that has since revolutionized experimental biology. The protein is, of course, green fluorescent protein (GFP). Continue reading “First Fluorescent Protein Identified in Vertebrates”

Turtle Power!

Nicole Crown

We often use the phrase “when pigs fly” to describe something that is extremely unlikely to happen.  But why is it so crazy that pigs could ever evolve wings?  In fact, why didn’t they evolve wings?

Maybe pigs never evolved wings because they couldn’t.  That is, there are developmental constrains on the basic body plan of pigs that prevent them from evolving wings.

This concept of developmental constraints occurs frequently in evolutionary and developmental biology.  Certain stages of development are non-negotiable; if development deviates too far from a given program, there are serious consequences for the organism.

On the other hand, there must be some breathing room in developmental programs so that organisms can evolve and adapt.

So, how has nature struck a balance between the need to stick closely to a developmental plan, but also allow for noise and fluctuation so that adaptation can occur?

Comparative studies of morphological data have led to an hourglass model of development in which the most constrained stages occur in mid-development when the basic body plan of an organism is established (called the phylotypic stage), whereas early and late stages are less constrained.  This theory has been most recently supported by molecular studies that show gene expression patterns are most conserved during mid-development.

In a huge collaborative effort, Wang and colleagues1 sequenced the genome and transciptome of two turtle species, the soft-shell turtle and the green sea turtle.  They were able to answer long standing questions about the evolutionary origins of turtles (they’re a sister group to crocodilians and birds), gain insight into the molecular mechanisms of unique turtle characteristics (they might live so long because of a gene with a role in antioxidative stress) and into how a turtle builds its shell (co-option of Wnt signaling normally used in limb bud formation).

But perhaps most pertinent here is their comparative analysis of turtle embryo development.  The authors’ previous studies made broad comparisons among vertebrates, sampling from different sub-taxa (for example, frogs vs. mouse) and they found that in this case, the most conserved stage was the vertebrate phylotypic stage.  In their present study, the authors asked what the most conserved stage of development is if the two organisms are both vertebrates and amniotes (a subtaxa of vertebrates).  Would it be the vertebrate or the amniote phylotypic period?

They compared gene expression in all developmental stages of the soft-shell turtle to all stages of the chicken embryo and found that the stage with the most shared gene expression corresponded to the vertebrate phylotypic stage, not the amniote.  They also found that turtle-specific expression of 223 genes begins after establishing the basic vertebrate body plan.

The authors’ findings suggest that, in the case of vertebrates, evolution is constrained by the developmental establishment of the vertebrate body plan, but that later developmental stages were fair game for natural selection to act on, ultimately ending up in morphological novelties like the turtle shell.  It would be interesting for the authors to expand their comparisons to other amniotes with unique morphological features to see if this pattern holds true.

  1. Want et al (2013). “The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan.” Nature Genetics 45:6. doi:10.1038/ng.2615

Further reading:

Irie, N. and S. Kuratani (2011). “Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.” Nature Communications 2. doi: 10.1038/ncomms124

Virtual Reality and Real Discovery

Celine Cammarata

We gain information about the world through our senses, but how does the brain decode this information?  A recent study by O’Connor et al. addresses this question using one of neuroscientists’ sneakier techniques: virtual reality.  Along the way, the authors further shed light on how attention effects perception.

Using the mouse somatosensory barrel cortex as a model, Continue reading “Virtual Reality and Real Discovery”

Leafing through the Literature

Thalyana Smith-Vikos

Highlighting recently published articles in molecular biology, genetics, and other hot topics

Trusting Your Gut Microbiota

Changes in human gut microbiota have been linked to an increasing likelihood of developing metabolic diseases. Karlsson et al. sequenced the fecal metagenome of 145 European women with normal, impaired or diabetic glucose control. From these profiles, the researchers developed a mathematical model to identify cases of type 2 diabetes, and predicted an individual’s diabetes-like metabolism by applying the model to women with impaired glucose control. They also discriminated between metagenomic markers for type 2 diabetes in their European cohort compared to a recently published Chinese cohort. Continue reading “Leafing through the Literature”

Recent Research Highlights on Pancreatic Cancer

Neeley Remmers

Immune cell infiltration as an indicator of the immune microenvironment of pancreatic cancer:
This paper investigates the types of inflammatory immune cells present in the tumor bed of tissue samples from patients diagnosed with pancreatic cancer. The results of this paper show that immune cells can be used for prognostic measures (meaning they can help estimate the relative survival time of the patient). The weight that this paper carries is that it, along with other studies, are starting to show the immune response has both diagnostic and prognostic value along with targeting it for therapeutics.

Continue reading “Recent Research Highlights on Pancreatic Cancer”

Immunotherapy and Cancer

Neeley Remmers

Hello All! I’ll begin this first blog by giving a little introduction of myself. I am a 5th year graduate student currently working on my thesis and preparing for my defense at the end of July. Part of me wants to jump for joy that the end is in sight while another part of me is freaking out about all the work I have left to do and yet another part of me is acting like a scared child afraid of the unknown and what is to come next. I have only begun working on lining up a job after I graduate; I know, I totally procrastinated on this end but only because I know I won’t be able to leave my lab until later this fall. But I figure the process of finding a job post-graduation could make for some good topics and experiences to share with everyone and hopefully through my blunders I can help make the process a little easier for one other person. Continue reading “Immunotherapy and Cancer”